Abstract
Segmentation of Organs at Risk is a fundamental step during radiotherapy planning for cancer treatment. Its goal is to preserve healthy tissue around the tumor and ensure that the most radiation strikes only cancer cells. Physicians do this job manually, which can be slow and error-prone. Thus, automatic segmentation methodologies can speed up organ delimiting during radiotherapy planning. This work designs a method, EfficientDeepLab, a convolutional neural network architecture trained on CT scans for trachea segmentation, and obtained an 88.6% dice score.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Amaro, E.J., Yamashita, H.: Aspectos básicos de tomografia computadorizada e ressonância magnética. Braz. J. Psychiatry 23, 2–3 (2001)
Baskar, R., Lee, K.A., Yeo, R., Yeoh, K.W.: Cancer and radiation therapy: current advances and future directions. Int. J. Med. Sci. 9(3), 193 (2012)
Chen, L.C., Papandreou, G., Kokkinos, I., Murphy, K., Yuille, A.L.: Semantic image segmentation with deep convolutional nets and fully connected CRFs (2016)
Chen, L.C., Papandreou, G., Kokkinos, I., Murphy, K., Yuille, A.L.: DeepLab: semantic image segmentation with deep convolutional nets, atrous convolution, and fully connected CRFs. IEEE Trans. Pattern Anal. Mach. Intell. 40(4), 834–848 (2018). https://doi.org/10.1109/tpami.2017.2699184
Chen, L.C., Zhu, Y., Papaãndreou, G., Schroff, F., Adam, H.: Encoder-decoder with atrous separable convolution for semantic image segmentation (2018)
Consídera, D.P., et al.: A tomografia computadorizada de alta resolução na avaliação da toxicidade pulmonar por amiodarona. Radiologia Brasileira 39, 113–118 (2006)
Deng, J., Dong, W., Socher, R., Li, L.J., Li, K., Fei-Fei, L.: Imagenet: a large-scale hierarchical image database. In: 2009 IEEE Conference on Computer Vision and Pattern Recognition, pp. 248–255 (2009). https://doi.org/10.1109/CVPR.2009.5206848
Diniz, J., Ferreira, J., Silva, G., Quintanilha, D., Silva, A., Paiva, A.: Segmentação de coração em tomografias computadorizadas utilizando atlas probabilístico e redes neurais convolucionais. In: Anais do XXI Simpósio Brasileiro de Computação Aplicada á Saúde, pp. 83–94. SBC, Porto Alegre, RS, Brasil (2021). https://doi.org/10.5753/sbcas.2021.16055. https://sol.sbc.org.br/index.php/sbcas/article/view/16055
Feng, S., et al.: CPFNet: context pyramid fusion network for medical image segmentation. IEEE Trans. Med. Imaging 39(10), 3008–3018 (2020). https://doi.org/10.1109/TMI.2020.2983721
Gupta, T., Narayan, C.A.: Image-guided radiation therapy: physician’s perspectives. J. Med. Phys./Assoc. Med. Physicists India 37(4), 174 (2012)
Hansen, P.C., Jørgensen, J., Lionheart, W.R.: Computed tomography: algorithms, insight, and just enough theory. SIAM (2021)
He, K., Zhang, X., Ren, S., Sun, J.: Spatial pyramid pooling in deep convolutional networks for visual recognition. In: Fleet, D., Pajdla, T., Schiele, B., Tuytelaars, T. (eds.) ECCV 2014. LNCS, vol. 8691, pp. 346–361. Springer, Cham (2014). https://doi.org/10.1007/978-3-319-10578-9_23
He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition (2015)
Kalender, W.A.: X-ray computed tomography. Phys. Med. Biol. 51(13), R29 (2006)
Kezmann, J.M.: Tensorflow advanced segmentation models (2020). https://github.com/JanMarcelKezmann/TensorFlow-Advanced-Segmentation-Models
Kingma, D.P., Ba, J.: Adam: a method for stochastic optimization (2017)
Lambert, Z., Petitjean, C., Dubray, B., Ruan, S.: Segthor: segmentation of thoracic organs at risk in CT images (2019). https://doi.org/10.48550/ARXIV.1912.05950. arxiv.org/abs/1912.05950
Noël, G., Antoni, D., Barillot, I., Chauvet, B.: Délinéation des organes á risque et contraintes dosimétriques. Cancer/Radiothérapie 20, S36–S60 (2016). https://doi.org/10.1016/j.canrad.2016.07.032. https://www.sciencedirect.com/science/article/pii/S1278321816301676. recorad: Recommandations pour la pratique de la radiothérapie externe et de la curiethérapie
Sandler, M., Howard, A., Zhu, M., Zhmoginov, A., Chen, L.C.: Mobilenetv 2: inverted residuals and linear bottlenecks (2019)
Tan, M., Le, Q.: EfficientNet: rethinking model scaling for convolutional neural networks. In: Chaudhuri, K., Salakhutdinov, R. (eds.) Proceedings of the 36th International Conference on Machine Learning. Proceedings of Machine Learning Research, vol. 97, pp. 6105–6114. PMLR (2019). https://proceedings.mlr.press/v97/tan19a.html
Tekatli, H., et al.: Normal tissue complication probability modeling of pulmonary toxicity after stereotactic and hypofractionated radiation therapy for central lung tumors. Int. J. Radiat. Oncol. Biol. Phys. 100(3), 738–747 (2018)
Wang, Q., et al.: 3D enhanced multi-scale network for thoracic organs segmentation. SegTHOR@ ISBI 3(1), 1–5 (2019)
Wang, S., et al.: Conquering data variations in resolution: a slice-aware multi-branch decoder network. IEEE Trans. Med. Imaging 39(12), 4174–4185 (2020). https://doi.org/10.1109/TMI.2020.3014433
Yan, X., Tang, H., Sun, S., Ma, H., Kong, D., Xie, X.: After-UNet: axial fusion transformer UNet for medical image segmentation. In: 2022 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), Los Alamitos, CA, USA, pp. 3270–3280. IEEE Computer Society (2022). https://doi.org/10.1109/WACV51458.2022.00333. https://doi.ieeecomputersociety.org/10.1109/WACV51458.2022.00333
Zhao, W., Chen, H., Lu, Y.: W-net: A network structure for automatic segmentation of organs at risk in thorax computed tomography. In: Proceedings of the 2020 2nd International Conference on Intelligent Medicine and Image Processing, IMIP 2020, pp. 66–69. Association for Computing Machinery, New York (2020). https://doi.org/10.1145/3399637.3399642
Acknowledgments
This work was carried out with the support of the Coordination for the Improvement of Higher Education Personnel - Brazil (CAPES) - Financing Code 001, Maranhão Research Support Foundation (FAPEMA), National Council for Scientific and Technological Development (CNPq) and Brazilian Company of Hospital Services (Ebserh) Brazil (Proc. 409593/2021-4).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this paper
Cite this paper
Fernandes, A.G.S., Braz Junior, G., Diniz, J.O.B., Silva, A.C., Matos, C.E.F. (2023). EfficientDeepLab for Automated Trachea Segmentation on Medical Images. In: Naldi, M.C., Bianchi, R.A.C. (eds) Intelligent Systems. BRACIS 2023. Lecture Notes in Computer Science(), vol 14196. Springer, Cham. https://doi.org/10.1007/978-3-031-45389-2_11
Download citation
DOI: https://doi.org/10.1007/978-3-031-45389-2_11
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-45388-5
Online ISBN: 978-3-031-45389-2
eBook Packages: Computer ScienceComputer Science (R0)