An Analytical Data Management as a Cloud Service for Numerical Simulations

  • Ramon G. Costa LNCC
  • Fábio Porto LNCC
  • Bruno Schulze LNCC

Resumo


Numerical simulation of natural phenomena is being fostered by recent advances in powerful high processing computing platforms. Scientists in various areas, such as human cardiovascular system, model a phenomenon being studied through a set of mathematical equations. The latter are transformed into a computing model, using one of the available numerical methods. As scientists strive to obtain a more realistic simulation, a huge amount of data is produced. Unfortunately, there has been little work on supporting numerical simulation data management, which leaves simulation scientists with huge standard text files and complex analytical programs that eventually extract some meaningful information to validate scientific hypotheses. In this context, this paper tries to bridge this gap by raising some issues involved in numerical simulation data analysis. A representation for numerical simulation data is presented that considers a multidimensional model, for dimensional variables, and their corresponding physical quantities. An initial set of analytical operators are identified and their semantics discussed. The SciDB system is used to implement a first prototype supporting the human cardiovascular system simulation developed at the LNCC. Additionally, a cloud service to interface with the numerical simulation data manager is proposed and its integration with the Neblina cloud middleware is explored. We expect that this work will provide a better understanding concerning the needs involved in analytical data management for multidimensional numerical simulations.

Referências

Alexandra Meliou et al. Causality in databases. IEEE Data Engineering Bulletin, 33(3):59–67, 2010.

E. Ogasawara et al. An algebraic approach for data-centric scientific workflows. In 37th Intl Conf. on VLDB, volume 4, pages 1328–1339, Seattle, USA, Aug 2011.

Felipe Fernandes et al. Neblina: Espaços virtuais de trabalho para uso em aplicações científicas. In XIXX SBRC, pages 965–972, Campo Grande, Brazil, Jun 2011.

Marta Mattoso et al. Towards supporting the life cycle of large scale scientific experiments. Business Process Integration and Mgmt, 5(1/2010):79–92, May 2010.

Michael Stonebraker et al. Requirements for science data bases and scidb. In Conference on Innovative Data Systems Research, Asilomar, USA, Jan 2009.

Pablo J. Blanco et al. On the potentialities of 3d-1d coupled models in hemodynamics simulations. Journal of Biomechanics, 42(7):919–930, Mar 2009.

Phillipe Cudre-Mauroux et al. A Demonstration of SciDB: A Science-Oriented DBMS. In 22th Intl Conference on VLDB, Lyon, France, Aug 2009.

Qi Zhang et al. Cloud computing: state-of-the-art and research challenges. Journal of Internet Services and Applications, 1(1):7–18, May 2010.

Yi Zhang et al. Storing matrices on disk: Theory and practice revisited. In 37th Intl Conference on Very Large Data Bases, Seatle, USA, Aug 2011.

Fabio Porto e Stefano Spaccapietra. The evolution of conceptual modeling. chapter Data model for scientific models and hypotheses, pages 285–305. Springer-Verlag, Berlin, Germany, 2011.

Laboratório Nacional de Computação Científica. Medicina Assistida por Computação Científica, Mar 2012. [link].

SciDB Inc. SciDB User’s Guide, 2011. [link].

John F. Sowa. Knowledge Representation: Logical, Philosophical, and Computational Foundations. Course Technology, Aug 1999.
Publicado
16/07/2012
COSTA, Ramon G.; PORTO, Fábio; SCHULZE, Bruno. An Analytical Data Management as a Cloud Service for Numerical Simulations. In: BRAZILIAN E-SCIENCE WORKSHOP (BRESCI), 6. , 2012, Curitiba/PR. Anais [...]. Porto Alegre: Sociedade Brasileira de Computação, 2012 . p. 1-8. ISSN 2763-8774.