Análise Comportamental Apoiada em Vídeo Rastreamento
Resumo
Atualmente softwares de bioimageamento apresentam limitações, onde pesquisadores, geralmente não especialistas em computação, estão sobrecarregados por focar somente na tecnologia e não na pesquisa que está desenvolvendo. Este trabalho apresenta um ambiente de análise
comportamental apoiada por vídeo rastreamento composto por módulos desktop e Web. Diferentemente dos demais sistemas, nossa contribuição pode
monitorar múltiplos corpos simultaneamente, os usuários podem configurar seus experimentos através de um ambiente para gestão simplificada dos dados gerados pelos experimentos. Essas características facilitam a gestão dos dados e permite a difusão do uso da aplicação por vários pesquisadores pois
é open-source e multiplataforma.
Referências
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Bayat, A. (2002) “Science, medicine, and the future: Bioinformatics” BMJ.
BGRG (2019).“Bioimaging”. Em: http://bit.ly/bioimaa. Acesso em: 15 de Mar de 2019.
BIO-TRACKING. (2019) “Bio-Tracking”, Em: http://www.bio-tracking.org, Acesso: 10 de Março de 2019.
Bjerselius, R., Lundstedt-Enkel, K., Olsén, H., Mayer, I., Dimberg, K. (2001) “Male goldfish reproductive behaviour and physiology are severely affected by exogenous exposure to 17β-estradiol.”, Aquatic Toxicology, v. 53, n. 2, p.139-152.
Branson, K., Robie, Alice A., Bender, J., Pietro, P. (2009) “High-throughput ethomics in large groups of Drosophila.”, Nature Methods, v. 6, n. 6, p.451-457, 3 (May).
CAB (2018).“What is Bioimaging?”,http://bit.ly/2kAYPeZ, Acesso: 15 de Mar de 2019.
Eliceiri, Kevin W., Berthold, M. R., Goldberg, I. G., Ibáñez, L., Manjunath, B. S., Martone, M. E., Murphy, R. F., Peng, H., Plant, A. L., Roysam, B., Stuurman, N.,
Swedlow, J. R., Tomancak, P., Carpenter, A. E. (2012) “Biological imaging software tools.”, Nature Methods, v. 9, n. 7, p. 697-710.
Gibney, Sinead M., Fagan, Eimear M., Waldron, A., O’Byrne, J., Connnor, T. J., Harkin, A. (2014), “Inhibition of stress-induced hepatic tryptophan 2,3- dioxygenase exhibits antidepressant activity in an animal model of depressive behaviour.”, The Int. Journal Of Neuropsychopharmacology, v. 17, n. 06, p.917-928, 29 (Jan).
Lopes, K.C.; Ferrao Filho, A. S.; Santos, E. G. N.; Santos, C. P.. 2017. Effects of crudeextracts of a saxitoxin-producer strain of the cyanobacterium Cylindrospermopsisraciborskii on the swimming behavior of wild and laboratory reared guppy Poeciliavivipara, Toxicon (Oxford). , v.129, 44-51
Magalhães, D.P., Cunha, R.A., Buss, D.F., Santos, J.A.A., Baptista, D.F., 2007. Behavioral response of the zebrafish Danio rerio to sublethal stress by sodium
hypochlorite evaluation of a method of toxicological essay by real-time biomonitoring in the laboratory. Ecotoxicology 16, 417–422.
Miller, Greg. (2018) “A New Research Tool That Can Track One Fish Among Many”, Wired, https://www.wired.com/2014/06/software-tracks-animals-science, 2 (Nov).
Moran, Greg; Fentress, John C.; Golani, Ilan. (1981) “A description of relational patterns of movement during ‘ritualized fighting’ in wolves.”, Animal Behaviour.
Nelson, Erika D., Ramberg, Jane E., Best, T., Sinnott, Robert A., (2012), “Neurologic effects of exogenous saccharides: A review of controlled human, animal, and in vitro studies.”, Nutritional Neuroscience, v. 15, n. 4, p.149-162.
Notari, L., Burman, O., Mills, D. S. (2016), “Is there a link between treatments with exogenous corticosteroids and dog behaviour problems?”, Veterinary Record, v. 179, n. 18, p.462-462, 15 (Set).
Ohayon, S., Avni, O., Taylor., A. L., Perona P., Egnor, R. (2013) “Auomated multi-day tracking of marked mice for the analysis of social behaviour”, J Neurosci Methods, v.219, n.1, p.10-19, 30 (Set).
Oxford (2019) “Exogenous”,http://bit.ly/exogenousM Acesso: 15 de Fevereiro de 2019.
Peng, H., Bateman, A., Valencia, A., Wren, J. D. (2012) “Bioimage informatics: a new category in Bioinformatics.” Bioinformatics, v. 28, n. 8, p.1057-1057, 6 (Mar).
Pérez-Escudero, Alfonso., Page, Julián V., Hinz, Robert C., Arganda, S., Polavieja, G. G. (2014) “IdTracker: tracking individuals in a group by automatic identification of unmarked animals.”, Nature Methods, v. 11, n. 7, p.743-748, 1 (jun).
Piccardi, M. (2004) “Background subtraction techniques: a review.”, 2004 Ieee International Conference On Systems, Man And Cybernetics, p.3099-3104.
Rachinas-Lopes, P., Ribeiro, R., Santos, M. E., Costa, R. M. (2018) “D-Track—A semiautomatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins.”, Plos One, v. 13, p.14-19, 16 (Ago).
Rusak, B., Zucker, I. (1975) “Biological Rhythms and Animal Behavior.” Annual Review Of Psychology, v. 26, n. 1, p.137-171.
Santos, E.G.N.; Santos, C. P.. 2013. Parasite-induced and parasite development dependent alteration of the swimming behavior of fish , Acta Tropica.v.127, 56-62.
Sridhar, VivekHari. (2019) “Tracktor”, Disponível Em: http://bit.ly/31uSXmB Acesso: 10 de Março de 2019.
Swedlow, Jason R.; Eliceiri, Kevin W. (2009) “Open source bioimage informatics for cell biology.”, Trends In Cell Biology, v. 19, n. 11, p.656-660.
Tolbert, Tyrone J.; Nakayama, Shinnosuke; Porfiri, Maurizio. (2018) “Tracking Nemo: Help Scientists Understand Zebrafish Behavior.”, Zebrafish, v. 15, n. 3, p.310-313.
Zhou, J., Peng, H. (2007) “Automatic recognition and annotation of gene expression patterns of fly embryos” Bioinformatics, v. 23, n. 8, p.589-596, 19 (Jan).
Bayat, A. (2002) “Science, medicine, and the future: Bioinformatics” BMJ.
BGRG (2019).“Bioimaging”. Em: http://bit.ly/bioimaa. Acesso em: 15 de Mar de 2019.
BIO-TRACKING. (2019) “Bio-Tracking”, Em: http://www.bio-tracking.org, Acesso: 10 de Março de 2019.
Bjerselius, R., Lundstedt-Enkel, K., Olsén, H., Mayer, I., Dimberg, K. (2001) “Male goldfish reproductive behaviour and physiology are severely affected by exogenous exposure to 17β-estradiol.”, Aquatic Toxicology, v. 53, n. 2, p.139-152.
Branson, K., Robie, Alice A., Bender, J., Pietro, P. (2009) “High-throughput ethomics in large groups of Drosophila.”, Nature Methods, v. 6, n. 6, p.451-457, 3 (May).
CAB (2018).“What is Bioimaging?”,http://bit.ly/2kAYPeZ, Acesso: 15 de Mar de 2019.
Eliceiri, Kevin W., Berthold, M. R., Goldberg, I. G., Ibáñez, L., Manjunath, B. S., Martone, M. E., Murphy, R. F., Peng, H., Plant, A. L., Roysam, B., Stuurman, N.,
Swedlow, J. R., Tomancak, P., Carpenter, A. E. (2012) “Biological imaging software tools.”, Nature Methods, v. 9, n. 7, p. 697-710.
Gibney, Sinead M., Fagan, Eimear M., Waldron, A., O’Byrne, J., Connnor, T. J., Harkin, A. (2014), “Inhibition of stress-induced hepatic tryptophan 2,3- dioxygenase exhibits antidepressant activity in an animal model of depressive behaviour.”, The Int. Journal Of Neuropsychopharmacology, v. 17, n. 06, p.917-928, 29 (Jan).
Lopes, K.C.; Ferrao Filho, A. S.; Santos, E. G. N.; Santos, C. P.. 2017. Effects of crudeextracts of a saxitoxin-producer strain of the cyanobacterium Cylindrospermopsisraciborskii on the swimming behavior of wild and laboratory reared guppy Poeciliavivipara, Toxicon (Oxford). , v.129, 44-51
Magalhães, D.P., Cunha, R.A., Buss, D.F., Santos, J.A.A., Baptista, D.F., 2007. Behavioral response of the zebrafish Danio rerio to sublethal stress by sodium
hypochlorite evaluation of a method of toxicological essay by real-time biomonitoring in the laboratory. Ecotoxicology 16, 417–422.
Miller, Greg. (2018) “A New Research Tool That Can Track One Fish Among Many”, Wired, https://www.wired.com/2014/06/software-tracks-animals-science, 2 (Nov).
Moran, Greg; Fentress, John C.; Golani, Ilan. (1981) “A description of relational patterns of movement during ‘ritualized fighting’ in wolves.”, Animal Behaviour.
Nelson, Erika D., Ramberg, Jane E., Best, T., Sinnott, Robert A., (2012), “Neurologic effects of exogenous saccharides: A review of controlled human, animal, and in vitro studies.”, Nutritional Neuroscience, v. 15, n. 4, p.149-162.
Notari, L., Burman, O., Mills, D. S. (2016), “Is there a link between treatments with exogenous corticosteroids and dog behaviour problems?”, Veterinary Record, v. 179, n. 18, p.462-462, 15 (Set).
Ohayon, S., Avni, O., Taylor., A. L., Perona P., Egnor, R. (2013) “Auomated multi-day tracking of marked mice for the analysis of social behaviour”, J Neurosci Methods, v.219, n.1, p.10-19, 30 (Set).
Oxford (2019) “Exogenous”,http://bit.ly/exogenousM Acesso: 15 de Fevereiro de 2019.
Peng, H., Bateman, A., Valencia, A., Wren, J. D. (2012) “Bioimage informatics: a new category in Bioinformatics.” Bioinformatics, v. 28, n. 8, p.1057-1057, 6 (Mar).
Pérez-Escudero, Alfonso., Page, Julián V., Hinz, Robert C., Arganda, S., Polavieja, G. G. (2014) “IdTracker: tracking individuals in a group by automatic identification of unmarked animals.”, Nature Methods, v. 11, n. 7, p.743-748, 1 (jun).
Piccardi, M. (2004) “Background subtraction techniques: a review.”, 2004 Ieee International Conference On Systems, Man And Cybernetics, p.3099-3104.
Rachinas-Lopes, P., Ribeiro, R., Santos, M. E., Costa, R. M. (2018) “D-Track—A semiautomatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins.”, Plos One, v. 13, p.14-19, 16 (Ago).
Rusak, B., Zucker, I. (1975) “Biological Rhythms and Animal Behavior.” Annual Review Of Psychology, v. 26, n. 1, p.137-171.
Santos, E.G.N.; Santos, C. P.. 2013. Parasite-induced and parasite development dependent alteration of the swimming behavior of fish , Acta Tropica.v.127, 56-62.
Sridhar, VivekHari. (2019) “Tracktor”, Disponível Em: http://bit.ly/31uSXmB Acesso: 10 de Março de 2019.
Swedlow, Jason R.; Eliceiri, Kevin W. (2009) “Open source bioimage informatics for cell biology.”, Trends In Cell Biology, v. 19, n. 11, p.656-660.
Tolbert, Tyrone J.; Nakayama, Shinnosuke; Porfiri, Maurizio. (2018) “Tracking Nemo: Help Scientists Understand Zebrafish Behavior.”, Zebrafish, v. 15, n. 3, p.310-313.
Zhou, J., Peng, H. (2007) “Automatic recognition and annotation of gene expression patterns of fly embryos” Bioinformatics, v. 23, n. 8, p.589-596, 19 (Jan).
Publicado
23/03/2020
Como Citar
FEIJOÓ, Matheus P. P.; MARROQUIM, Ricardo; PAIVA, Alexandre; SANTOS, Claudia P.; CUNHA, Rodolfo; JARDIM, Rodrigo; DA CRUZ, Sergio Manuel Serra.
Análise Comportamental Apoiada em Vídeo Rastreamento. In: ESCOLA REGIONAL DE SISTEMAS DE INFORMAÇÃO DO RIO DE JANEIRO (ERSI-RJ), 6. , 2019, Duque de Caxias.
Anais [...].
Porto Alegre: Sociedade Brasileira de Computação,
2020
.
