Um Servidor de Ontologias para Sistemas de Biodiversidade
Resumo
A pesquisa em biodiversidade requer correlacionar dados sobre seres vivos e seus habitats, integrando desde relacionamentos espaciais a especificações de domínio, freqüentemente usando ontologias. Nesse contexto estão os Sistemas de Biodiversidade, novas soluções de gerenciamento que permitem aos pesquisadores analisar as características das espécies e suas interações. O objetivo deste projeto é especificar e desenvolver um serviço Web para ontologias, que possa ser usado por diferentes sistemas de biodiversidade. Dentre as contribuições deste trabalho estão a especificação das necessidades de um serviço de ontologias e a especificação e implementação deste serviço. A pesquisa está diretamente relacionada com o primeiro desafio (gerenciamento de grandes volumes de dados multimídias) e provê subsídios a pesquisa no segundo desafio (modelagem computacional em sistemas complexos).Referências
Alani, H., Brewster, C., and Shadbolt, N. (2006). Ranking Ontologies with AKTiveRank. In International Semantic Web Conference, volume 4273 of Lecture Notes in Computer Science, pages 1–15. Springer.
Alani, H., Harris, S., and O’Neill, B. (2005). OntologyWinnowing: A Case Study on the AKT Reference Ontology. In CIMCA/IAWTIC, pages 710–715. IEEE Computer Society.
Antoniou, G. and van Harmelen, F. (2003). Web Ontology Language: OWL. In Staab, S. and Studer, R., editors, Handbook on Ontologies in Information Systems, pages 76–92.
Bruijn, J., Martin-Recuerda, F., Manov, D., and Ehrig, M. (2004). State-of-the-art survey on Ontology Merging and Aligning. Technical report, SEKT project D4.2.1.
Carroll, J., Dickinson, I., Dollin, C., Reynolds, D., Seaborne, A., and Wilkinson, K. (2004). Jena: implementing the semantic web recommendations. In WWW Alt. ’04: Proc. of the 13th international World Wide Web, pages 74–83. ACM Press.
Ding, L., Finin, T., Joshi, A., Pan, R., Cost, R. S., Peng, Y., Reddivari, P., Doshi, V., and Sachs, J. (2004). Swoogle: a Search and Metadata Engine for the Semantic Web. In 2155 CIKM ’04: Proc. of the thirteenth ACM international conference on Information and knowledge management, pages 652–659, New York, NY, USA. ACM Press.
Doan, A., Madhavan, J., Domingos, P., and Halevy, A. (2002). Learning to Map between Ontologies on the Semantic Web. In WWW ’02: Proc. of the 11th international conference on World Wide Web, pages 662–673. ACM Press.
Duke, M. and Patel, M. (2003). An Ontology Server for Agentcities.NET. Agentcities Task Force Technical Note.
E. Jiménez, R. Berlanga, I. S. M. J. A. R. D. (2005). OntoPathView: A Simple View Definition Language for the Collaborative Development of Ontologies. In B. López et al. (Eds.): Artificial Intelligence Research and Development, pages 429–436.
Felicíssimo, C. H. (2004). Interoperabilidade Semântica na Web: Uma Estratégia para o Alinhamento Taxonômico de Ontologias. Master’s thesis, PUC-Rio de Janeiro.
Gennari, J. H., Musen, M. A., Fergerson, R., Grosso, W. E., Crubzy, M., Eriksson, H., Noy, N. F., and Tu, S. W. (2003). The Evolution of Protege: An Environment for Knowledge-Based Systems Development. International Journal of Human-Computer Studies, 58(1):89–123.
Gruber, T. (1995). Towards Principles for the Design of Ontologies Used for Knowledge Sharing. International Journal of Human-Computer Studies, 43(5-6):907–928.
Hartmann, J., Sure, Y., Haase, P., Palma, R., and Suárez-Figueroa, M. C. (2005). OMV – Ontology Metadata Vocabulary. In Welty, C., editor, ISWC 2005 - In Ontology Patterns for the Semantic Web.
Kalfoglou, Y. and Schorlemmer, M. (2003). Ontology Mapping: the State of the Art. Knowledge Engineering Review, 18(1):1–31.
Kong, H., Hwang, M., and Kim, P. (2005). A New Methodology for Merging the Heterogeneous Domain Ontologies Based on the WordNet. In NWESP ’05: Proc. of the International Conference on Next Generation Web Services Practices, page 235, Washington, DC, USA. IEEE Computer Society.
Lee, J. (2003). An Application Programming Interface for Ontology. IBM T. J. Watson Research Center. Document from SNOBASE v.1.0 release documentation.
Li, Y., Thompson, S., Tan, Z., Giles, N., and Gharib, H. (2003). Beyond Ontology Construction; Ontology Services as Online Knowledge Sharing Communities.
McDiarmid, R. (1998). The Integrated Taxonomic Information System. In Proc. of the Taxonomic Authority Files Workshop.
McGuinness, D. L., Fikes, R., Rice, J., and Wilder, S. (2000). The Chimaera Ontology Environment. In Proc. of the 17th National Conference on Artificial Intelligence and 12th Conference on Innovative Applications of Artificial Intelligence, pages 1123–1124.
Noy, N. F. and Musen, M. A. (2000). PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment. In Seventeenth International Joint Conference on Artificial IntelligenceAAAI/IAAI, pages 450–455.
Noy, N. F. and Musen, M. A. (2004). Specifying Ontology Views by Traversal. In McIlraith, S. A., Plexousakis, D., and van Harmelen, F., editors, International Semantic Web Conference, volume 3298 of Lecture Notes in Computer Science, pages 713–725.
Parr, C. S., Parafiynyk, A., Sachs, J., Ding, L., Dornbush, S., Finin, T. W., Wang, D., and Hollander, A. (2006). Integrating Ecoinformatics Resources on the Semantic Web. In Proc. in 15th International Conference on World Wide Web, pages 1073–1074. ACM.
Patel, C., Supekar, K., Lee, Y., and Park, E. K. (2003). OntoKhoj: a Semantic Web Portal for Ontology Searching, Ranking and Classification. In WIDM ’03: Proc. of the 5th ACM international workshop on Web information and data management, pages 58–61, New York, NY, USA. ACM Press.
Prud’hommeaux, E. and Seaborne, A. (2006). SPARQL Query Language for RDF. Technical report, World Wide Web Consortium - W3C.
Ramos, J. A. (2001). Mezcla automática de ontologías y catálogos electrónicos. Final Year Project. Facultad de Informática de la Universidad Politécnica de Madrid. Spain.
Seaborne, A. (2003). RDQL: A Query Language for RDF. Technical report, World Wide Web Consortium - W3C.
Shvaiko, P. and Euzenat, J. (2004). A Survey of Schema-based Matching Approaches. Technical Report DIT-04-087, University of Trento.
Suguri, H., Kodama, E., Miyazaki, M., Nunokawa, H., and Noguchi, S. (2001). Implementation of FIPA ontology service. In Workshop on Ontologies in Agent Systems, 5th International Conference on Autonomous Agents.
Torres, R. S., Medeiros, C. B., Gonçalves, M. A., and Fox., E. A. (2006). A Digital Library Framework for Biodiversity Information Systems. International Journal on Digital Libraries, 6(1):3 – 17.
Tury, M. and Bieliková, M. (2006). An Approach to Detection Ontology Changes. In ICWE ’06: Workshop proceedings of the sixth international conference on Web engineering, page 14, New York, NY, USA. ACM Press.
Volz, R., Oberle, D., and Studer, R. (2003). Implementing Views for Light-Weight Web Ontologies. In Proc. of Int. Database Engineering and Application Symposium (IDEAS), Hong Kong, China.
WeBios (2005). WeBios: Web Service Multimodal Tools for Strategic Biodiversity Research, Assessment and Monitoring. Home Page: [link].
Alani, H., Harris, S., and O’Neill, B. (2005). OntologyWinnowing: A Case Study on the AKT Reference Ontology. In CIMCA/IAWTIC, pages 710–715. IEEE Computer Society.
Antoniou, G. and van Harmelen, F. (2003). Web Ontology Language: OWL. In Staab, S. and Studer, R., editors, Handbook on Ontologies in Information Systems, pages 76–92.
Bruijn, J., Martin-Recuerda, F., Manov, D., and Ehrig, M. (2004). State-of-the-art survey on Ontology Merging and Aligning. Technical report, SEKT project D4.2.1.
Carroll, J., Dickinson, I., Dollin, C., Reynolds, D., Seaborne, A., and Wilkinson, K. (2004). Jena: implementing the semantic web recommendations. In WWW Alt. ’04: Proc. of the 13th international World Wide Web, pages 74–83. ACM Press.
Ding, L., Finin, T., Joshi, A., Pan, R., Cost, R. S., Peng, Y., Reddivari, P., Doshi, V., and Sachs, J. (2004). Swoogle: a Search and Metadata Engine for the Semantic Web. In 2155 CIKM ’04: Proc. of the thirteenth ACM international conference on Information and knowledge management, pages 652–659, New York, NY, USA. ACM Press.
Doan, A., Madhavan, J., Domingos, P., and Halevy, A. (2002). Learning to Map between Ontologies on the Semantic Web. In WWW ’02: Proc. of the 11th international conference on World Wide Web, pages 662–673. ACM Press.
Duke, M. and Patel, M. (2003). An Ontology Server for Agentcities.NET. Agentcities Task Force Technical Note.
E. Jiménez, R. Berlanga, I. S. M. J. A. R. D. (2005). OntoPathView: A Simple View Definition Language for the Collaborative Development of Ontologies. In B. López et al. (Eds.): Artificial Intelligence Research and Development, pages 429–436.
Felicíssimo, C. H. (2004). Interoperabilidade Semântica na Web: Uma Estratégia para o Alinhamento Taxonômico de Ontologias. Master’s thesis, PUC-Rio de Janeiro.
Gennari, J. H., Musen, M. A., Fergerson, R., Grosso, W. E., Crubzy, M., Eriksson, H., Noy, N. F., and Tu, S. W. (2003). The Evolution of Protege: An Environment for Knowledge-Based Systems Development. International Journal of Human-Computer Studies, 58(1):89–123.
Gruber, T. (1995). Towards Principles for the Design of Ontologies Used for Knowledge Sharing. International Journal of Human-Computer Studies, 43(5-6):907–928.
Hartmann, J., Sure, Y., Haase, P., Palma, R., and Suárez-Figueroa, M. C. (2005). OMV – Ontology Metadata Vocabulary. In Welty, C., editor, ISWC 2005 - In Ontology Patterns for the Semantic Web.
Kalfoglou, Y. and Schorlemmer, M. (2003). Ontology Mapping: the State of the Art. Knowledge Engineering Review, 18(1):1–31.
Kong, H., Hwang, M., and Kim, P. (2005). A New Methodology for Merging the Heterogeneous Domain Ontologies Based on the WordNet. In NWESP ’05: Proc. of the International Conference on Next Generation Web Services Practices, page 235, Washington, DC, USA. IEEE Computer Society.
Lee, J. (2003). An Application Programming Interface for Ontology. IBM T. J. Watson Research Center. Document from SNOBASE v.1.0 release documentation.
Li, Y., Thompson, S., Tan, Z., Giles, N., and Gharib, H. (2003). Beyond Ontology Construction; Ontology Services as Online Knowledge Sharing Communities.
McDiarmid, R. (1998). The Integrated Taxonomic Information System. In Proc. of the Taxonomic Authority Files Workshop.
McGuinness, D. L., Fikes, R., Rice, J., and Wilder, S. (2000). The Chimaera Ontology Environment. In Proc. of the 17th National Conference on Artificial Intelligence and 12th Conference on Innovative Applications of Artificial Intelligence, pages 1123–1124.
Noy, N. F. and Musen, M. A. (2000). PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment. In Seventeenth International Joint Conference on Artificial IntelligenceAAAI/IAAI, pages 450–455.
Noy, N. F. and Musen, M. A. (2004). Specifying Ontology Views by Traversal. In McIlraith, S. A., Plexousakis, D., and van Harmelen, F., editors, International Semantic Web Conference, volume 3298 of Lecture Notes in Computer Science, pages 713–725.
Parr, C. S., Parafiynyk, A., Sachs, J., Ding, L., Dornbush, S., Finin, T. W., Wang, D., and Hollander, A. (2006). Integrating Ecoinformatics Resources on the Semantic Web. In Proc. in 15th International Conference on World Wide Web, pages 1073–1074. ACM.
Patel, C., Supekar, K., Lee, Y., and Park, E. K. (2003). OntoKhoj: a Semantic Web Portal for Ontology Searching, Ranking and Classification. In WIDM ’03: Proc. of the 5th ACM international workshop on Web information and data management, pages 58–61, New York, NY, USA. ACM Press.
Prud’hommeaux, E. and Seaborne, A. (2006). SPARQL Query Language for RDF. Technical report, World Wide Web Consortium - W3C.
Ramos, J. A. (2001). Mezcla automática de ontologías y catálogos electrónicos. Final Year Project. Facultad de Informática de la Universidad Politécnica de Madrid. Spain.
Seaborne, A. (2003). RDQL: A Query Language for RDF. Technical report, World Wide Web Consortium - W3C.
Shvaiko, P. and Euzenat, J. (2004). A Survey of Schema-based Matching Approaches. Technical Report DIT-04-087, University of Trento.
Suguri, H., Kodama, E., Miyazaki, M., Nunokawa, H., and Noguchi, S. (2001). Implementation of FIPA ontology service. In Workshop on Ontologies in Agent Systems, 5th International Conference on Autonomous Agents.
Torres, R. S., Medeiros, C. B., Gonçalves, M. A., and Fox., E. A. (2006). A Digital Library Framework for Biodiversity Information Systems. International Journal on Digital Libraries, 6(1):3 – 17.
Tury, M. and Bieliková, M. (2006). An Approach to Detection Ontology Changes. In ICWE ’06: Workshop proceedings of the sixth international conference on Web engineering, page 14, New York, NY, USA. ACM Press.
Volz, R., Oberle, D., and Studer, R. (2003). Implementing Views for Light-Weight Web Ontologies. In Proc. of Int. Database Engineering and Application Symposium (IDEAS), Hong Kong, China.
WeBios (2005). WeBios: Web Service Multimodal Tools for Strategic Biodiversity Research, Assessment and Monitoring. Home Page: [link].
Publicado
30/06/2007
Como Citar
DALTIO, Jaudete; MEDEIROS, Claudia M. Bauzer.
Um Servidor de Ontologias para Sistemas de Biodiversidade. In: SEMINÁRIO INTEGRADO DE SOFTWARE E HARDWARE (SEMISH), 34. , 2007, Rio de Janeiro/RJ.
Anais [...].
Porto Alegre: Sociedade Brasileira de Computação,
2007
.
p. 2143-2157.
ISSN 2595-6205.
