Off-the-shelf 3D Lung Segmentation in CT using Generalized Histogram Thresholding

  • Marcelo A. F. de Toledo USP
  • Marina F. S. Rebelo USP
  • José E. Krieger USP
  • Marco A. Gutierrez USP


Computerized Tomography is very important for lung disease diagnostics, including computer assisted methods. Lung segmentation is usually a first step in further sophisticated methods of diagnosis. If in one hand, deep learning methods have state-of-the-art performance, they aren't as simple to apply compared to classical methods, sometimes requiring extra data and training. We designed a method specific for lung segmentation based on histogram thresholding. We observed that, in our proposed method, by changing from Otsu to the more recently developed GHT we got a significant improvement in segmentation, jumping from 77% to 91% average dice (from 90% to 95% median dice, respectively), approaching deep learning methods (UNet) results (94% average and 97% median dice). Even though our proposed method runs on CPU, it's still 2.6 times faster than UNet on GPU. Moreover, our proposed method is off-the-shelf, requiring no training or parameter calibration, being suitable as pre-processing for more sophisticated methods that aim specific diagnoses.


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TOLEDO, Marcelo A. F. de; REBELO, Marina F. S.; KRIEGER, José E.; GUTIERREZ, Marco A.. Off-the-shelf 3D Lung Segmentation in CT using Generalized Histogram Thresholding. In: SIMPÓSIO BRASILEIRO DE COMPUTAÇÃO APLICADA À SAÚDE (SBCAS), 21. , 2021, Evento Online. Anais [...]. Porto Alegre: Sociedade Brasileira de Computação, 2021 . p. 71-82. ISSN 2763-8952. DOI: